The number of international benchmarking competitions is steadily increasing in various fields of machine learning (ML) research and practice. So far, however, little is known about the common practice as well as bottlenecks faced by the community in tackling the research questions posed. To shed light on the status quo of algorithm development in the specific field of biomedical imaging analysis, we designed an international survey that was issued to all participants of challenges conducted in conjunction with the IEEE ISBI 2021 and MICCAI 2021 conferences (80 competitions in total). The survey covered participants' expertise and working environments, their chosen strategies, as well as algorithm characteristics. A median of 72% challenge participants took part in the survey. According to our results, knowledge exchange was the primary incentive (70%) for participation, while the reception of prize money played only a minor role (16%). While a median of 80 working hours was spent on method development, a large portion of participants stated that they did not have enough time for method development (32%). 25% perceived the infrastructure to be a bottleneck. Overall, 94% of all solutions were deep learning-based. Of these, 84% were based on standard architectures. 43% of the respondents reported that the data samples (e.g., images) were too large to be processed at once. This was most commonly addressed by patch-based training (69%), downsampling (37%), and solving 3D analysis tasks as a series of 2D tasks. K-fold cross-validation on the training set was performed by only 37% of the participants and only 50% of the participants performed ensembling based on multiple identical models (61%) or heterogeneous models (39%). 48% of the respondents applied postprocessing steps.

Accurate airway extraction from computed tomography (CT) images is a critical step for planning navigation bronchoscopy and quantitative assessment of airway-related chronic obstructive pulmonary disease (COPD). The existing methods are challenging to sufficiently segment the airway, especially the high-generation airway, with the constraint of the limited label and cannot meet the clinical use in COPD. We propose a novel two-stage 3D contextual transformer-based U-Net for airway segmentation using CT images. The method consists of two stages, performing initial and refined airway segmentation. The two-stage model shares the same subnetwork with different airway masks as input. Contextual transformer block is performed both in the encoder and decoder path of the subnetwork to finish high-quality airway segmentation effectively. In the first stage, the total airway mask and CT images are provided to the subnetwork, and the intrapulmonary airway mask and corresponding CT scans to the subnetwork in the second stage. Then the predictions of the two-stage method are merged as the final prediction. Extensive experiments were performed on in-house and multiple public datasets. Quantitative and qualitative analysis demonstrate that our proposed method extracted much more branches and lengths of the tree while accomplishing state-of-the-art airway segmentation performance. The code is available at https://github.com/zhaozsq/airway_segmentation.

This paper asks the intriguing question: is it possible to exploit neural architecture search (NAS) as a new attack vector to launch previously improbable attacks? Specifically, we present EVAS, a new attack that leverages NAS to find neural architectures with inherent backdoors and exploits such vulnerability using input-aware triggers. Compared with existing attacks, EVAS demonstrates many interesting properties: (i) it does not require polluting training data or perturbing model parameters; (ii) it is agnostic to downstream fine-tuning or even re-training from scratch; (iii) it naturally evades defenses that rely on inspecting model parameters or training data. With extensive evaluation on benchmark datasets, we show that EVAS features high evasiveness, transferability, and robustness, thereby expanding the adversary's design spectrum. We further characterize the mechanisms underlying EVAS, which are possibly explainable by architecture-level ``shortcuts'' that recognize trigger patterns. This work raises concerns about the current practice of NAS and points to potential directions to develop effective countermeasures.

最近，知识表示学习（KRL）正在作为对知识图（kgs）处理查询的最新方法的出现，其中kg实体和查询被嵌入到一个潜在空间中，以使回答查询的实体是嵌入在查询附近。然而，尽管对KRL进行了深入的研究，但大多数现有研究要么侧重于同质KG，要么承担kg完成任务（即缺失事实的推断），同时回答对具有多个方面的kgs的复杂逻辑查询（多视图kg）仍然是一个开放的挑战。为了弥合这一差距，在本文中，我们提出了罗马，这是一个新颖的KRL框架，用于回答多视图KGS的逻辑查询。与先前的工作相比，罗姆人在主要方面离开。 （i）它将多视图kg建模为一组覆盖子kg，每个kg对应于一种视图，该视图集成了文献中研究的许多类型的kg（例如，颞kg）。 （ii）它支持具有不同关系和视图约束的复杂逻辑查询（例如，具有复杂的拓扑和/或从多个视图中）； （iii）它比例扩大到大小（例如，数百万个事实）和细粒状视图（例如，数十个观点）； （iv）它概括地查询训练过程中未观察到的结构和kg观点。对现实世界KGS的广泛经验评估表明，\系统明显优于替代方法。

Context-aware decision support in the operating room can foster surgical safety and efficiency by leveraging real-time feedback from surgical workflow analysis. Most existing works recognize surgical activities at a coarse-grained level, such as phases, steps or events, leaving out fine-grained interaction details about the surgical activity; yet those are needed for more helpful AI assistance in the operating room. Recognizing surgical actions as triplets of <instrument, verb, target> combination delivers comprehensive details about the activities taking place in surgical videos. This paper presents CholecTriplet2021: an endoscopic vision challenge organized at MICCAI 2021 for the recognition of surgical action triplets in laparoscopic videos. The challenge granted private access to the large-scale CholecT50 dataset, which is annotated with action triplet information. In this paper, we present the challenge setup and assessment of the state-of-the-art deep learning methods proposed by the participants during the challenge. A total of 4 baseline methods from the challenge organizers and 19 new deep learning algorithms by competing teams are presented to recognize surgical action triplets directly from surgical videos, achieving mean average precision (mAP) ranging from 4.2% to 38.1%. This study also analyzes the significance of the results obtained by the presented approaches, performs a thorough methodological comparison between them, in-depth result analysis, and proposes a novel ensemble method for enhanced recognition. Our analysis shows that surgical workflow analysis is not yet solved, and also highlights interesting directions for future research on fine-grained surgical activity recognition which is of utmost importance for the development of AI in surgery.

AI正在经历范式转变，随着模型的兴起（例如Bert，Dall-E，GPT-3），这些模型经过大规模的数据训练，并且可以适应广泛的下游任务。我们称这些模型基础模型来强调其至关重要但不完整的特征。该报告提供了基础模型的机会和风险的详尽说明，包括其功能（例如语言，愿景，机器人技术，推理，人类互动）和技术原则（例如，模型架构，培训程序，数据，系统，安全，安全性，评估，理论）对其应用（例如法律，医疗保健，教育）和社会影响（例如不平等，滥用，经济和环境影响，法律和道德考虑）。尽管基础模型基于标准的深度学习和转移学习，但它们的规模导致了新的新兴能力，以及它们在许多任务中的有效性都激发了同质化。同质化提供了强大的杠杆作用，但要求谨慎，因为基础模型的缺陷均由下游的所有适应模型继承。尽管即将广泛地部署基础模型，但我们目前对它们的工作方式，失败以及由于其新兴属性的影响而缺乏清晰的了解。为了解决这些问题，我们认为基础模型的许多批判性研究都需要与他们的基本社会技术性质相称。

Masked image modeling (MIM) performs strongly in pre-training large vision Transformers (ViTs). However, small models that are critical for real-world applications cannot or only marginally benefit from this pre-training approach. In this paper, we explore distillation techniques to transfer the success of large MIM-based pre-trained models to smaller ones. We systematically study different options in the distillation framework, including distilling targets, losses, input, network regularization, sequential distillation, etc, revealing that: 1) Distilling token relations is more effective than CLS token- and feature-based distillation; 2) An intermediate layer of the teacher network as target perform better than that using the last layer when the depth of the student mismatches that of the teacher; 3) Weak regularization is preferred; etc. With these findings, we achieve significant fine-tuning accuracy improvements over the scratch MIM pre-training on ImageNet-1K classification, using all the ViT-Tiny, ViT-Small, and ViT-base models, with +4.2%/+2.4%/+1.4% gains, respectively. Our TinyMIM model of base size achieves 52.2 mIoU in AE20K semantic segmentation, which is +4.1 higher than the MAE baseline. Our TinyMIM model of tiny size achieves 79.6% top-1 accuracy on ImageNet-1K image classification, which sets a new record for small vision models of the same size and computation budget. This strong performance suggests an alternative way for developing small vision Transformer models, that is, by exploring better training methods rather than introducing inductive biases into architectures as in most previous works. Code is available at https://github.com/OliverRensu/TinyMIM.

We propose a distributionally robust return-risk model for Markov decision processes (MDPs) under risk and reward ambiguity. The proposed model optimizes the weighted average of mean and percentile performances, and it covers the distributionally robust MDPs and the distributionally robust chance-constrained MDPs (both under reward ambiguity) as special cases. By considering that the unknown reward distribution lies in a Wasserstein ambiguity set, we derive the tractable reformulation for our model. In particular, we show that that the return-risk model can also account for risk from uncertain transition kernel when one only seeks deterministic policies, and that a distributionally robust MDP under the percentile criterion can be reformulated as its nominal counterpart at an adjusted risk level. A scalable first-order algorithm is designed to solve large-scale problems, and we demonstrate the advantages of our proposed model and algorithm through numerical experiments.

This paper presents a practical global optimization algorithm for the K-center clustering problem, which aims to select K samples as the cluster centers to minimize the maximum within-cluster distance. This algorithm is based on a reduced-space branch and bound scheme and guarantees convergence to the global optimum in a finite number of steps by only branching on the regions of centers. To improve efficiency, we have designed a two-stage decomposable lower bound, the solution of which can be derived in a closed form. In addition, we also propose several acceleration techniques to narrow down the region of centers, including bounds tightening, sample reduction, and parallelization. Extensive studies on synthetic and real-world datasets have demonstrated that our algorithm can solve the K-center problems to global optimal within 4 hours for ten million samples in the serial mode and one billion samples in the parallel mode. Moreover, compared with the state-of-the-art heuristic methods, the global optimum obtained by our algorithm can averagely reduce the objective function by 25.8% on all the synthetic and real-world datasets.

Forecasts by the European Centre for Medium-Range Weather Forecasts (ECMWF; EC for short) can provide a basis for the establishment of maritime-disaster warning systems, but they contain some systematic biases.The fifth-generation EC atmospheric reanalysis (ERA5) data have high accuracy, but are delayed by about 5 days. To overcome this issue, a spatiotemporal deep-learning method could be used for nonlinear mapping between EC and ERA5 data, which would improve the quality of EC wind forecast data in real time. In this study, we developed the Multi-Task-Double Encoder Trajectory Gated Recurrent Unit (MT-DETrajGRU) model, which uses an improved double-encoder forecaster architecture to model the spatiotemporal sequence of the U and V components of the wind field; we designed a multi-task learning loss function to correct wind speed and wind direction simultaneously using only one model. The study area was the western North Pacific (WNP), and real-time rolling bias corrections were made for 10-day wind-field forecasts released by the EC between December 2020 and November 2021, divided into four seasons. Compared with the original EC forecasts, after correction using the MT-DETrajGRU model the wind speed and wind direction biases in the four seasons were reduced by 8-11% and 9-14%, respectively. In addition, the proposed method modelled the data uniformly under different weather conditions. The correction performance under normal and typhoon conditions was comparable, indicating that the data-driven mode constructed here is robust and generalizable.